PmiREN: Plant microRNA Encyclopedia

Atr-MIR171b

Basic info.

miRNA locus ID
Atr-MIR171b

miRNA locus accession
PmiREN000215

Organism
Amborella trichopoda

Genomic location
Atr-AmTr_v1.0_scaffold00060 3430300 3430420 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

     AAGG  A  C    C C   C                    TG       CC    TAG
         GG CT GGTT G GTG GGTGTTGGCACGGTTCAATC  ACTGCTG  CTGC   
         || || |||| | ||| ||||||||||||||||||||  |||||||  ||||   T
         CC GA CTAA C CAC CTATAACCGTGCCGAGTTAG  TGGTGGT  GACG   
ACTAAGCTA  -  -    - T   A                    CG       AT    TGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00044.249	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.65	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00156.32	2.0	1	NA

Mature miRNA conservation

Link

Reference

No reference

Atr-MIR171b

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