Atr-MIR171f

Basic info.

• miRNA locus ID
• Atr-MIR171f

• miRNA locus accession
• PmiREN000219

• Organism
• Amborella trichopoda

• Genomic location
• Atr-AmTr_v1.0_scaffold00013  1859857  1859977  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

TTAACAT  AACT    ---T           AA          A   GAG   T   TAGA
       GG    CGAA    CGTGGTATTGG  CGGCTCAATC GAT   AAG CCT    
       ||    ||||    |||||||||||  |||||||||| |||   ||| |||    A
       CC    GCTT    GCACTATAACC  GCCGAGTTAG CTA   TTC GGA    
GATTACT  -GTC    CGTT           GC          A   ATA   T   CGAG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference