PmiREN: Plant microRNA Encyclopedia

Aof-MIR171a

Basic info.

miRNA locus ID
Aof-MIR171a

miRNA locus accession
PmiREN000942

Organism
Asparagus officinalis

Genomic location
Aof-NC_033800.1 95110472 95110616 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

TCCAT     T   T    T         C       T     TAC   -TAG       ACAAAAGAAAAGAA
     TGAAA AGT ACTA GATGTTGGC CGGTTCA TCAGA   CAC    CTAAGGC              
     ||||| ||| |||| ||||||||| ||||||| |||||   |||    |||||||               
     ACTTT TCA TGAT CTATAACCG GCCGAGT AGTCT   GTG    GATTCCG              
 TCTT     C   -    T         T       T     TTT   TTTA       AATTCCTAATGAAA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_020385272.1	0.5	NA	NA
XM_020392229.1	0.5	NA	NA
XM_020421067.1	2.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Aof-MIR171a

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