PmiREN: Plant microRNA Encyclopedia

Aof-MIR171b

Basic info.

miRNA locus ID
Aof-MIR171b

miRNA locus accession
PmiREN000943

Organism
Asparagus officinalis

Genomic location
Aof-NC_033798.1 123303150 123303272 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  CGGTGGATGATTAAAA    C          A         C  T   TGAA     A GAC
                  GAAG GATATTGGTG GGTTCAATC GA GAT    TTTAC C   
                  |||| |||||||||| ||||||||| || |||    ||||| |    
                  CTTC CTATAACCGC CCGAGTTAG CT CTG    AGATG G   
AAACGTTCTTTTACCTCC    A          G         A  -   -TCA     - TAG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_020385272.1	1.0	NA	2 (1)
XM_020392229.1	1.0	NA	NA
XM_020403055.1	2.0	NA	NA
XM_020421067.1	2.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Aof-MIR171b

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