Aof-MIR171c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
          TTT   CAA      A      A                   ------TAAT    CTTGC
        AA   GGT   GGAGCG GATATT GTGCGGTTCAATTAGAAAA          GTTC     
        ||   |||   |||||| |||||| |||||||||||||||||||          ||||      
        TT   TCG   CCTTGC CTATAA CGTGCCGAGTTAATTTTTT          CAAG     
TACTATTG  ---   ---      A      C                   TTTTTTGCCT    TTTCG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

XM_020421067.1 1.5 NA NA
XM_020385272.1 2.0 NA NA
XM_020392229.1 2.0 NA NA
XM_020414999.1 2.0 NA NA
XM_020416063.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference