PmiREN: Plant microRNA Encyclopedia

Aof-MIR171g

Basic info.

miRNA locus ID
Aof-MIR171g

miRNA locus accession
PmiREN000948

Organism
Asparagus officinalis

Genomic location
Aof-NC_033801.1 7378854 7378963 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  AGA        AAG      AC        C         A  GCTT    TTTA
     AGAAGAAG   ACATGA  GATATTGG TTGGCTCAT TC    AGGA    
     ||||||||   ||||||  |||||||| ||||||||| ||    ||||     
     TCTTCTTC   TGTGCT  CTATAACC AGCCGAGTA AG    TCCT    
CGACA        CTA      CA        A         G  --AT    CATC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XR_002246735.1	3.5	NA	2 (1)
XM_020403055.1	0.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Aof-MIR171g

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