Bdi-MIR171b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
TA  -   -T     AG                        A  C      TCTCTG   -   CTG     CG
  CT GGC  GGGAG  TGCGATGTTGGCACGGTTCAATCA AT GGGTGG      CAT GCA   GCTTG  
  || |||  |||||  |||||||||||||||||||||||| || ||||||      ||| |||   |||||   
  GA CCG  TCTTC  ACGCTATAACCGTGCCGAGTTAGT TA CTCGCT      GTA CGT   CGAAC  
AC  T   TT     GA                        C  C      -TTGTA   G   ---     GA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Bradi1g52240.1 0.5 NA NA
Bradi3g50930.3 0.5 NA NA
Bradi1g09633.1 1.0 NA NA
Bradi1g78230.1 1.0 NA NA
Bradi3g32890.1 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference