Bdi-MIR171a

Basic info.

• miRNA locus ID
• Bdi-MIR171a

• miRNA locus accession
• PmiREN001119

• Organism
• Brachypodium distachyon

• Genomic location
• Bdi-Bd5  21823077  21823190  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

 G   -    -    CG      CA        T             - T  T   G TG
  GTC GAAG AAGA  ACATGG  TGGTATTG TTCGGCTCATGTC C TC CGA C  
  ||| |||| ||||  ||||||  |||||||| ||||||||||||| | || ||| |   
  CAG CTTC TTCT  TGTACC  ACTATAAC AAGCCGAGTGTAG G AG GCT G  
AA   A    C    TA      -C        C             A T  -   G TA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• No reference