Bju-MIR171a

Basic info.

• miRNA locus ID
• Bju-MIR171a

• miRNA locus accession
• PmiREN001656

• Organism
• Brassica juncea

• Genomic location
• Bju-CM007193.1  8032387  8032511  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

    CA   A     CCT  TT         C       C      --  TCC   TTACACACGT
      CGA AGAGT   CT  GATATTGGC TGGTTCA TCAGAT  CT   AGA          
      ||| |||||   ||  ||||||||| ||||||| ||||||  ||   |||          A
      GCT TCTCG   GA  CTATAACCG GCCGAGT AGTCTA  GA   TCT          
CTCACT   C     --T  CT         C       T      TT  TTC   TACATATATC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference