Bju-MIR171c

Basic info.

• miRNA locus ID
• Bju-MIR171c

• miRNA locus accession
• PmiREN001658

• Organism
• Brassica juncea

• Genomic location
• Bju-CM007196.1  49205288  49205405  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

    C    A    TC    TT         C       T      CT   -T  -ACC   A
     ACGA AGAG  CCCT  GATATTGGC TGGTTCA TCAGAT  TCT  GA    ACA 
     |||| ||||  ||||  ||||||||| ||||||| ||||||  |||  ||    ||| T
     TGCT TCTC  GGGA  CTATAACCG GCCGAGT AGTCTA  AGA  CT    TGT 
ATCTC    C    --    CT         C       T      -T   TT  CTTA   A

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference