Bna-MIR171j

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
    C    A     CCC  TT         C       T      CT   -T  -ACCA   T
     ACGA AGAGT   CT  GATATTGGC TGGTTCA TCAGAT  TCT  GA     CAT 
     |||| |||||   ||  ||||||||| ||||||| ||||||  |||  ||     ||| A
     TGCT TCTCG   GA  CTATAACCG GCCGAGT AGTCTA  AGA  CT     GTA 
CTAGA    C     --T  CT         C       T      -T   TT  CTTAC   T

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

XM_013852286.2 0.0 NA 0 (2)
XM_013883853.2 NA NA 0 (1)
XM_013785274.2 NA NA 1 (1)
XM_022718497.1 0.0 NA 2 (1)
XM_013816532.2 NA NA 2 (1)
XM_013837450.2 NA NA 2 (1)
XM_013843509.2 NA NA 2 (1)
XM_013883859.2 NA NA 2 (1)
XM_013832628.2 0.0 NA 4 (1)
XM_013872928.2 0.0 NA 4 (1)
XM_013841612.2 0.0 NA NA
XM_013879337.2 0.0 NA NA
XM_013881692.2 0.0 NA NA
XR_002663632.1 0.0 NA NA
XR_001279212.2 1.0 NA NA
XR_001272725.2 2.0 NA NA
XR_001280160.2 2.0 NA NA
XR_001282809.2 2.0 NA NA
XR_002652944.1 2.0 NA NA
XR_002658380.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference