Bna-MIR171n

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  TGATGTAAGCTGGTCAA   A      A             A    --    CA    TAGT
                   GCG GATATT GTGCGGTTCAATC AATA  GTCG  CTCT    
                   ||| |||||| ||||||||||||| ||||  ||||  ||||     
                   CGC CTATAA CGTGCCGAGTTAG TTGT  TAGT  GAGA    
TATTGGTAGAACCAATATA   A      C             C    TT    TA    TAGA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

XM_013832628.2 1.5 NA 0 (1)
XM_022711858.1 NA NA 1 (1)
XM_013841612.2 1.5 NA 2 (1)
XM_013883859.2 NA NA 2 (1)
XM_013896660.2 NA NA 2 (1)
XM_013879337.2 1.5 NA 3 (1)
XM_013797403.2 1.5 NA 4 (1)
XM_013872928.2 1.5 NA 4 (1)
XM_013830007.2 1.5 NA NA
XM_013852286.2 1.5 NA NA
XM_013881692.2 1.5 NA NA
XM_022718497.1 1.5 NA NA
XR_002663632.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference