Bni-MIR171a

Basic info.

• miRNA locus ID
• Bni-MIR171a

• miRNA locus accession
• PmiREN002260

• Organism
• Brassica nigra

• Genomic location
• Bni-CM004492.1  33336060  33336178  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

    C    A     CCC  TT         C       T      CT   -T  --ACC   A
     ACGA AGAGT   CT  GATATTGGC TGGTTCA TCAGAT  TCT  GA     ACA 
     |||| |||||   ||  ||||||||| ||||||| ||||||  |||  ||     ||| T
     TGCT TCTCG   GA  CTATAACCG GCCGAGT AGTCTA  AGA  CT     TGT 
ATCTC    C     --T  CT         C       T      -T   TT  CCTTA   A

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference