Bni-MIR171e

Basic info.

• miRNA locus ID
• Bni-MIR171e

• miRNA locus accession
• PmiREN002264

• Organism
• Brassica nigra

• Genomic location
• Bni-CM004498.1  31299711  31299831  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  CTA    -AAAG   A A  A                       -AAT  ACA    TTTG
     AGGT     ACA T CG GATATTGGTGCGGTTCAATCAGA    CC   CTCT    
     ||||     ||| | || |||||||||||||||||||||||    ||   ||||     
     TCCG     TGT A GC CTATAACCGTGCCGAGTTAGTTT    GG   GAGA    
CCACC    GTTAA   G -  A                       GTTT  CTA    TGTT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference