PmiREN: Plant microRNA Encyclopedia

Can-MIR171c

Basic info.

miRNA locus ID
Can-MIR171c

miRNA locus accession
PmiREN002954

Organism
Capsicum annuum

Genomic location
Can-NC_029978.1 141720461 141720576 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

       ATAC   TAT     A           A           A  T    -    TTCT
     AA    GTA   ATACG GATATTGGTGC GTTCAATCAGA AA CGAA TTCT    
     ||    |||   ||||| ||||||||||| ||||||||||| || |||| ||||     
     TT    CAT   TATGC CTATAACCGTG CGAGTTAGTTT TT GTTT AAGA    
TCACT  ATCA   ---     A           C           A  -    C    TTTG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_016690051.1	0.5	NA	NA
XM_016713779.1	0.5	NA	NA
XM_016713784.1	0.5	NA	NA
XM_016705099.1	1.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Can-MIR171c

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