PmiREN: Plant microRNA Encyclopedia

Can-MIR171g

Basic info.

miRNA locus ID
Can-MIR171g

miRNA locus accession
PmiREN002958

Organism
Capsicum annuum

Genomic location
Can-NC_029985.1 20992534 20992655 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TTTAGATGGATGAAT     A                   G       C TAC     GA
                 ACACG GATATTGGTGCGGTTCAAT AGAAAGC G   TCGAA  
                 ||||| ||||||||||||||||||| ||||||| |   |||||  A
                 TGTGC CTATAACCGCGCCGAGTTA TTTTTCG C   AGTTT  
GAAGTGTTCTAAATCAT     A                   G       T -TC     TA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_016690051.1	1.0	NA	NA
XM_016714660.1	2.0	2	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Can-MIR171g

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