PmiREN: Plant microRNA Encyclopedia

Can-MIR171i

Basic info.

miRNA locus ID
Can-MIR171i

miRNA locus accession
PmiREN002960

Organism
Capsicum annuum

Genomic location
Can-NC_029983.1 24119060 24119185 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

     TGACTA     TT  A    C          A            A  -  -AG     ATTTT
           GTAAA  AG GAAG GATGTTGGTG GGTTCAATCTGA GA CG   TTTAC     
           |||||  || |||| |||||||||| |||||||||||| || ||   |||||     A
           CATTT  TC CTTT CTATAACCGC CCGAGTTAGACT CT GC   AAATG     
AGTTAGTTAAC     --  -    A          G            -  A  AAG     CTTTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_016690051.1	1.0	NA	NA
XM_016714660.1	2.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Can-MIR171i

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