PmiREN: Plant microRNA Encyclopedia

Cpa-MIR171c

Basic info.

miRNA locus ID
Cpa-MIR171c

miRNA locus accession
PmiREN003206

Organism
Carica papaya

Genomic location
Cpa-supercontig_70 1070956 1071087 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

      TCA   -       TGTTG                     A      - CT    TTA    C  GA
         TGA TGAAAGT     GATGTTGGCATGGTTCAATCA ATTAAA G  CTCA   ATGG TG  
         ||| |||||||     ||||||||||||||||||||| |||||| |  ||||   |||| ||   
         ACT ACTTTTA     CTATAACCGTGCCGAGTTAGT TGATTT C  GAGT   TACT AT  
TTAATCCCG   C       -----                     C      T TT    -TG    T  AG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm.model.supercontig_158.5	0.5	0	NA
evm.model.supercontig_29.139	0.5	NA	NA
evm.model.supercontig_49.157	0.5	NA	NA
evm.model.supercontig_87.87	1.5	1	NA
evm.model.supercontig_10.121	2.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Cpa-MIR171c

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