PmiREN: Plant microRNA Encyclopedia

Car-MIR171g

Basic info.

miRNA locus ID
Car-MIR171g

miRNA locus accession
PmiREN003935

Organism
Cicer arietinum

Genomic location
Car-NC_021165.1 33152688 33152815 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

AAA   -    AAGA   --GC     A     A  C G      CAAATT            ATT
   GAA ATAG    TAA    ACGAG TATTG CG G CTCAAT      ACATGGTTGGTA   
   ||| ||||    |||    ||||| ||||| || | ||||||      ||||||||||||    
   CTT TATC    ATT    TGTTC ATAAC GC C GAGTTA      TGTACCAATTGT   
 TA   A    CGTG   AATT     C     C  A G      AACTTC            ATT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XR_001144174.1	0.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Car-MIR171g

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