PmiREN: Plant microRNA Encyclopedia

Car-MIR171h

Basic info.

miRNA locus ID
Car-MIR171h

miRNA locus accession
PmiREN004162

Organism
Cicer arietinum

Genomic location
Car-NC_021167.1 6250331 6250454 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GTATGAAGTAGCTATTGTGA       T       C     --    AAAATGTA        TTT
                      TATTGGC TGGTTCA TCAGA  CAAA        ACTTTTTT   
                      ||||||| ||||||| |||||  ||||        ||||||||    
                      ATAACCG GCCGAGT AGTTT  GTTT        TGGAAAAG   
ACTTTTACTTTATCGTAATTCT       T       T     TA    --------        TGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_004506417.2	0.5	NA	NA
XM_004515408.2	0.5	NA	NA
XM_004515409.2	0.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Car-MIR171h

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