Cla-MIR171a

Basic info.

• miRNA locus ID
• Cla-MIR171a

• miRNA locus accession
• PmiREN004234

• Organism
• Citrullus lanatus

• Genomic location
• Cla-AGCB01006078.1  3689  3805  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  GTACGAAA   G     C          A         T  A  -  G         C
          ATG GAAAG GATATTGGTG GGTTCAATC GA GA CG ATTTTACAA 
          ||| ||||| |||||||||| ||||||||| || || || ||||||||| G
          TAT TTTTC CTATAACCGC CCGAGTTAG CT CT GC TGAAGTGTT 
TTCGTTGAAC   G     A          G         T  -  A  A         A

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference