Cla-MIR171c

Basic info.

• miRNA locus ID
• Cla-MIR171c

• miRNA locus accession
• PmiREN004236

• Organism
• Citrullus lanatus

• Genomic location
• Cla-AGCB01018857.1  531  648  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

         T     ATT  A  G                   A         TG     AAAA
      GGG TTTGA   CA CG GATATTGGTGCGGTTCAAT AGAAGGTAA  TCCAA    
      ||| |||||   || || ||||||||||||||||||| |||||||||  |||||     
      CTT AAACT   GT GC CTATAACCGTGCCGAGTTA TTTTTCGTT  GGGTT    
TTCCTT   T     ---  -  A                   G         TT     GTAG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference