Cla-MIR171d

Basic info.

• miRNA locus ID
• Cla-MIR171d

• miRNA locus accession
• PmiREN004237

• Organism
• Citrullus lanatus

• Genomic location
• Cla-AGCB01028269.1  88375  88487  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

 TGTTTTCTTGT      TCT        A               C   TCT    TG
            ATTGTG   GATGTTGG ACGGTTCAATCAAAT AAA   CCTA  
            ||||||   |||||||| ||||||||||||||| |||   ||||  A
            TAGCAC   CTATAACC TGCCGAGTTAGTTTA TTT   GGGT  
TGTTAATGTTGT      ---        G               A   TCT    TA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference