Cla-MIR171e

Basic info.

• miRNA locus ID
• Cla-MIR171e

• miRNA locus accession
• PmiREN004238

• Organism
• Citrullus lanatus

• Genomic location
• Cla-AGCB01006648.1  14317  14438  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

TTTTGTTTTTGTGTTTGAACGA         C                T  T    TGTTT
                      GATGTTGGT CGGTTCAATAAGAAAG AG GCTC     
                      ||||||||| |||||||||||||||| || ||||      
                      CTATAACCG GCCGAGTTATTTTTTC TC TGGG     
CTACTTACTCACTATTTGTGCA         T                T  T    TTCAA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference