Cla-MIR171f

Basic info.

• miRNA locus ID
• Cla-MIR171f

• miRNA locus accession
• PmiREN004239

• Organism
• Citrullus lanatus

• Genomic location
• Cla-AGCB01000391.1  4970  5080  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

ACTCTATTTCTCTCTAGCTC       T  -     G  -     C  ---- G  - ACT
                    GAAATAG TT ACTCT AT ATTGG CC    G TT C   
                    ||||||| || ||||| || ||||| ||    | || |    
                    TAGTTTA TA CGTAT TC ATATT TT    A AA A   
ACTCTATAACCGTGCCGAGT       -  T     -  A     -  GTAT -  T GAC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference