Cla-MIR171g

Basic info.

• miRNA locus ID
• Cla-MIR171g

• miRNA locus accession
• PmiREN004240

• Organism
• Citrullus lanatus

• Genomic location
• Cla-AGCB01032738.1  18942  19084  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

   GCT     T   T   AT         C       C     -     ----------      A    ATA   TTC
      TGAAA AGC GCT  GATATTGGT CGGTTCA TCAGA TCAGT          ACCCAC TACG   CAG   
      ||||| ||| |||  ||||||||| ||||||| ||||| |||||          |||||| ||||   |||    
      ACTTT TCG TGA  CTATAACCG GCCGAGT AGTCT AGTCA          TGGGTG ATGT   GTT   
ATTTAT     C   -   CT         C       T     G     ATTCGAAATT      -    -AG   CTG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference