Cla-MIR171i

Basic info.

• miRNA locus ID
• Cla-MIR171i

• miRNA locus accession
• PmiREN004242

• Organism
• Citrullus lanatus

• Genomic location
• Cla-AGCB01018855.1  14943  15089  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

    TGC       TT      A             C       GAA      G     -   ATCATTCATA    CAACT
   G   AAAAAAT  AAGATG AGGTATTGATGCG CTCAATT   AAGTAT GTTAT ATT          CTGT     
   |   |||||||  |||||| ||||||||||||| |||||||   |||||| ||||| |||          ||||     T
   C   TTTTTTA  TTCTAT TCTATAACTGCGC GAGTTAG   TTTATG TAATA TAA          GACA     
TTT TTT       -C      C             C       ---      G     A   ----------    AAAGA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference