Csi-MIR171a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  AGGATGGATGGGTACT    G                   A     A   T      TAC
                  CACG GATATTGGTGCGGTTCAAT AGAAA CGG GCTCAA   
                  |||| ||||||||||||||||||| ||||| ||| ||||||    
                  GTGC CTATAACCGCGCCGAGTTA TTTTT GCC CGAGTT   
GTTAATCTCTCGCTCACC    A                   G     C   T      TTT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

orange1.1g035299m 0.0 0 NA
orange1.1g005237m 1.0 NA NA
orange1.1g005326m 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference