Csi-MIR171b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
AAGCAAGAAAAAAACGA   C   ATTGGTGAGGTTCAATCCGAAGACGGATTTACACATTGAAGTTGTAA
                 AAG GAT                                               
                 ||| |||                                                
                 TAA GTA                                               
               TA   -   AAAATATTTAATTCACTATAACCGCGCCGAGTTAGACTCTAGCAGAA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

orange1.1g042460m 2.5 NA 0 (1)
orange1.1g005237m 1.0 NA 4 (1)
orange1.1g035299m 0.0 0 NA
orange1.1g005326m 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference