Csi-MIR171d

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  TAC    A   T     C         C       T      -  -----          A
     TGAA TAG CACTG GATATTGGC CGGTTCA TCAGAG CT     TAAGCGTTTA 
     |||| ||| ||||| ||||||||| ||||||| |||||| ||     |||||||||| G
     ACTT ATT GTGAT CTATAACCG GCCGAGT AGTTTC GG     GTTCGTAAGT 
CACAA    C   C     T         T       T      A  TGGTC          C

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

orange1.1g005237m 0.5 NA NA
orange1.1g005326m 0.5 NA NA
orange1.1g035299m 0.5 0 NA
orange1.1g042460m 0.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference