PmiREN: Plant microRNA Encyclopedia

Csi-MIR171f

Basic info.

miRNA locus ID
Csi-MIR171f

miRNA locus accession
PmiREN004806

Organism
Citrus sinensis

Genomic location
Csi-scaffold00017 1276172 1276308 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

ATAT         T   C T         C       C      ---------     -  TTTA        TA
    ATGAAAGGG AGC G GATATTGGC TGGTTCA TCAGAC         AAACC GG    TTTGCTCT  
    ||||||||| ||| | ||||||||| ||||||| ||||||         ||||| ||    ||||||||   
    TACTTTCTC TTG C CTATAACCG GCCGAGT AGTTTG         TTTGG CC    AAACGAGA  
 TTT         T   - T         T       T      GTTTTGTTT     A  -TTG        TT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
orange1.1g005237m	0.5	NA	NA
orange1.1g005326m	0.5	NA	NA
orange1.1g035299m	0.5	0	NA
orange1.1g042460m	0.5	NA	NA

Mature miRNA conservation

Link

Reference

>MicroRNA Sequencing Revealed Citrus Adaptation to Long-Term Boron Toxicity through Modulation of Root Development by miR319 and miR171. Int J Mol Sci, 2019

>Citrus psorosis virus 24K protein interacts with citrus miRNA precursors, affects their processing and subsequent miRNA accumulation and target expression. Mol Plant Pathol, 2016