Csi-MIR171g

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
       -   -TAA   T            A        C  TC   ATT      G
GTGGTAG GAG    AGT TGATGTTGGCAT GCTCAATC GA  AAA   CTCAGT 
||||||| |||    ||| |||||||||||| |||||||| ||  |||   |||||| C
TACTATC CTC    TTA ACTATAACCGTG CGAGTTAG CT  TTT   GAGTCG 
       T   TTAC   C            C        T  TA   CCT      A

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

orange1.1g042460m 0.5 NA 4 (1)
orange1.1g005237m 0.5 NA NA
orange1.1g005326m 0.5 NA NA
orange1.1g035299m 0.5 0 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference