PmiREN: Plant microRNA Encyclopedia

Csi-MIR171e

Basic info.

miRNA locus ID
Csi-MIR171e

miRNA locus accession
PmiREN004808

Organism
Citrus sinensis

Genomic location
Csi-scaffold00007 1828567 1828684 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

ATTCCACAAA    ---   A                    TGAG     T    AAAGTC
          GCAT   ACG GATATTGGTGCGGTTCAATC    AGCAG GCTC      
          ||||   ||| ||||||||||||||||||||    ||||| ||||       
          CGTG   TGC CTATAACCGTGCCGAGTTAG    TTGTC CGAG      
 CTTAACTAA    CAC   A                    TTTA     C    AAGAAT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
orange1.1g005237m	0.5	NA	NA
orange1.1g005326m	0.5	NA	NA
orange1.1g035299m	0.5	0	NA
orange1.1g042460m	0.5	NA	NA

Mature miRNA conservation

Link

Reference

>MicroRNA Sequencing Revealed Citrus Adaptation to Long-Term Boron Toxicity through Modulation of Root Development by miR319 and miR171. Int J Mol Sci, 2019

>Citrus psorosis virus 24K protein interacts with citrus miRNA precursors, affects their processing and subsequent miRNA accumulation and target expression. Mol Plant Pathol, 2016