PmiREN: Plant microRNA Encyclopedia

Cme-MIR171a

Basic info.

miRNA locus ID
Cme-MIR171a

miRNA locus accession
PmiREN005148

Organism
Cucumis melo

Genomic location
Cme-NW_007546279.1 5851334 5851450 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

     CGAA   CA     C          A         T  A   G -         C
  GTA    AAT  GAAAG GATATTGGTG GGTTCAATC GA GAT G ATTTTACAA 
  |||    |||  ||||| |||||||||| ||||||||| || ||| | ||||||||| G
  CGT    TTA  TTTTC CTATAACCGC CCGAGTTAG CT CTA C TGAAGTGTT 
TC   TATA   TG     A          G         T  -   G A         A

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_008450640.2	0.0	NA	NA
XM_008459909.2	0.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Cme-MIR171a

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