PmiREN: Plant microRNA Encyclopedia

Cme-MIR171b

Basic info.

miRNA locus ID
Cme-MIR171b

miRNA locus accession
PmiREN005149

Organism
Cucumis melo

Genomic location
Cme-NW_007546301.1 3077731 3077848 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

          -     TTTA   G                   A         T      AATA
     GGGTT TTGAT    ACG GATATTGGTGCGGTTCAAT AAAAGGTAA ACTCAA    
     ||||| |||||    ||| ||||||||||||||||||| ||||||||| ||||||     
     TCCAG AACTG    TGC CTATAACCGTGCCGAGTTA TTTTTCGTT TGGGTT    
CTCCT     C     ----   A                   G         T      GCGA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_008450640.2	0.5	NA	NA
XM_008459909.2	0.5	NA	NA
XM_008455503.2	1.5	1	NA

Mature miRNA conservation

Link

Reference

No reference

Cme-MIR171b

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