PmiREN: Plant microRNA Encyclopedia

Cme-MIR171e

Basic info.

miRNA locus ID
Cme-MIR171e

miRNA locus accession
PmiREN005193

Organism
Cucumis melo

Genomic location
Cme-NW_007546281.1 4792734 4792863 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GCTTGAAATAGTTGCTATGA       C       C      CACT   -  AAATTGACTAGGGT
                      TATTGGT CGGTTCA TCAGAT    ACC CT              
                      ||||||| ||||||| ||||||    ||| ||              T
                      ATAACCG GCCGAGT AGTCTG    AGT AA              
AATTATACTTTCTCGTGACTCT       C       T      ----   T  ATTTGAAGTTTACT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_008450640.2	0.0	NA	NA
XM_008459909.2	0.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Cme-MIR171e

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