Cma-MIR171c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   GCT         C   CT       A C       C      -    ACCT    ACC    G            TAGC
      TGAAATAGC GCT  GATATTG C CGGTTCA TCAGAT CAGT    GTTT   AGCT CACGACATGCAC    
      ||||||||| |||  ||||||| | ||||||| |||||| ||||    ||||   |||| ||||||||||||    T
      ACTTTATTG TGA  CTATAAC G GCCGAGT AGTCTA GTCG    CGAA   TTGA GTGCTGTACGTG    
GTATAT         -   CT       C C       T      A    -ATT    -AT    -            TTCA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

XM_023144304.1 0.0 NA NA
XM_023149535.1 0.0 NA NA
XM_023150753.1 0.0 NA NA
XM_023151952.1 0.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference