PmiREN: Plant microRNA Encyclopedia

Cma-MIR171d

Basic info.

miRNA locus ID
Cma-MIR171d

miRNA locus accession
PmiREN005284

Organism
Cucurbita maxima

Genomic location
Cma-NW_019272038.1 1992494 1992645 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GCTT    T   C   CT         C       C       G TAC     A  ACAATTA      CG    G
      GAAA AGT GTT  GATATTGGC CGGTTCA TCAGATT A   CTACA GT       CGCTAT  GTAC 
      |||| ||| |||  ||||||||| ||||||| ||||||| |   ||||| ||       ||||||  |||| T
      CTTT TCG CGA  CTATAACCG GCCGAGT AGTTTGA T   GATGT CA       GTGATG  CGTG 
TTACTT    C   T   TT         C       T       G --C     -  AATTTGG      TA    C

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_023144304.1	NA	NA
XM_023149535.1	NA	NA
XM_023150753.1	NA	NA
XM_023151952.1	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Cma-MIR171d

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