PmiREN: Plant microRNA Encyclopedia

Cma-MIR171e

Basic info.

miRNA locus ID
Cma-MIR171e

miRNA locus accession
PmiREN005285

Organism
Cucurbita maxima

Genomic location
Cma-NW_019272052.1 1042969 1043091 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

       T   G T     TCAA   G                   A         -C    AAAAA
      G AGG T TTGAT    ACG GATATTGGTGCGGTTCAAT AGAAGGCAA  CCCA     
      | ||| | |||||    ||| ||||||||||||||||||| |||||||||  ||||      
      C TTC G AACTG    TGC CTATAACCGTGCCGAGTTA TTTTTCGTT  GGGT     
TTATTA C   G C     ----   A                   G         TT    CGGTA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_023144304.1	1.5	NA	NA
XM_023149535.1	1.5	NA	NA
XM_023150753.1	1.5	NA	NA
XM_023151952.1	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Cma-MIR171e

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