PmiREN: Plant microRNA Encyclopedia

Egu-MIR171c

Basic info.

miRNA locus ID
Egu-MIR171c

miRNA locus accession
PmiREN005524

Organism
Erythranthe guttata

Genomic location
Egu-NW_012193538.1 405825 406081 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

CTTCCCGATCGGGGAGAG     G        G       A        ------  GA    -   ATTCC   T  -  ACCAACTCAGCAGCCTTGTACAGCTGGTCAACTACTGCCTGTTGTTGTCCTAGTTC
                  GTGGT ATTGAGCC CGCCAAT TCCCTTGC      GC  GTAC GAG     CTG CT GG                                                        
                  ||||| |||||||| ||||||| ||||||||      ||  |||| |||     ||| || ||                                                        A
                  CGTCG TGGTTTGG GTGGTTG AGGGAGTG      GT  CGAG AGG     TAG TG TG                                                        
         CGTCGTATA     -        -       -        GTCGAG  --    G   --GAT   -  A  GTTGTCTTCGGCTTTTGGTGGCTGACGCCGCCGCCGCCGCCACGCCGCTACCACCT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_012988114.1	0.0	NA	NA
XR_001173752.1	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Egu-MIR171c

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