PmiREN: Plant microRNA Encyclopedia

Esa-MIR171c

Basic info.

miRNA locus ID
Esa-MIR171c

miRNA locus accession
PmiREN005631

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_22 730398 730487 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

      C   GAAACG    TT         A   --        TG
  CGCT TTT      GAGG  TGTTGGTGT GTT  GTTACTGT  
  |||| |||      ||||  ||||||||| |||  ||||||||   
  GTGG AAG      TTCC  ATAACCGCG CGA  TAGTGGTA  
GT    C   AGCGCG    CT         C   GT        GA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Thhalv10001784m	0.0	0	NA
Thhalv10006506m	0.0	0	NA
Thhalv10029148m	0.0	0	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIR171c

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