PmiREN: Plant microRNA Encyclopedia

Fve-MIR171a

Basic info.

miRNA locus ID
Fve-MIR171a

miRNA locus accession
PmiREN005955

Organism
Fragaria vesca

Genomic location
Fve-LG6 34450098 34450214 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GAT   T    ATA   G         C         A      C  C      TGT
     GGA CGGT   ACG GATATTGGT CGGTTCAAT AGAAAA AG GCTCGA   
     ||| ||||   ||| ||||||||| ||||||||| |||||| || ||||||   G
     CCT GTCA   TGC CTATAACCG GCCGAGTTA TTTTTT TC CGAGTT   
TTTAT   C    CCG   A         T         G      A  T      CGA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
gene03956-v1.0-hybrid.t1	0.5	NA	4 (1)
gene31749-v1.0-hybrid.t1	0.5	NA	4 (1)
gene37887-v2.0.a2-hybrid.t2	0.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Fve-MIR171a

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