PmiREN: Plant microRNA Encyclopedia

Fve-MIR171b

Basic info.

miRNA locus ID
Fve-MIR171b

miRNA locus accession
PmiREN005956

Organism
Fragaria vesca

Genomic location
Fve-LG7 20263046 20263189 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 TC    --    CAG   T  T         AG       A  AA   ATCCC         -----    T   AAC
   TGCA  GAAG   ACA GG GTGATATTG  TCGGCTC TC  TCA     AGTCATATT     CGTG TCA   
   ||||  ||||   ||| || |||||||||  ||||||| ||  |||     |||||||||     |||| |||    
   ACGT  CTTC   TGT TC CACTATAAC  AGCCGAG AG  AGT     TTAGTATAA     GCAC AGT   
AAT    TT    TTA   -  T         CA       C  --   ---CT         TAATT    T   AGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
gene11137-v1.0-hybrid.t1	1.0	1	NA

Mature miRNA conservation

Link

Reference

No reference

Fve-MIR171b

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