PmiREN: Plant microRNA Encyclopedia

Fve-MIR171f

Basic info.

miRNA locus ID
Fve-MIR171f

miRNA locus accession
PmiREN005959

Organism
Fragaria vesca

Genomic location
Fve-LG1 2548836 2548972 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

CAGTAGGGAT   T ----------     C          A         C  A  CA       AAACATA     GCT
          GAA C          GAAAG GATGTTGGTG GGTTCAATC GA GA  GATTTAC       TGGCT   
          ||| |          ||||| |||||||||| ||||||||| || ||  |||||||       |||||    
          CTT G          CTTTC CTATAACCGC CCGAGTTAG CT CT  TTAAATG       ACCGG   
        AT   C TTAATAAATT     A          G         A  -  AG       ------C     ACG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
gene31749-v1.0-hybrid.t1	1.0	NA	4 (1)
gene03956-v1.0-hybrid.t1	1.0	NA	NA
gene37887-v2.0.a2-hybrid.t2	1.5	NA	NA
gene11137-v1.0-hybrid.t1	2.0	2	NA

Mature miRNA conservation

Link

Reference

No reference

Fve-MIR171f

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