Fan-MIR171a

Basic info.

• miRNA locus ID
• Fan-MIR171a

• miRNA locus accession
• PmiREN006195

• Organism
• Fragaria ananassa

• Genomic location
• Fan-BATT01565114.1  110  335  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

         CCAC    ATT   CTCA             -    A   CTTTCTTAAATAATTGCTT    AT  CCTTTCGATT CTTTTAGTTCCTCTATAACTTCATAGCTAAATTTCAGTTCGTAGTTTATA
             GTAA   GAT    GATTGAGCCGCGC CAAT TCA                   CTAC  AC          G                                                  
             ||||   |||    ||||||||||||| |||| |||                   ||||  ||          |                                                   
             CATT   CTG    TTAACTCGGTGTG GTTA AGT                   ACGT  AA          T                                                  
TATACCAACTATA    ---   ----             T    A   -------------------    --  ---------- TCACTGTATTTTATCGTTACGTTCGATCGATCGACTTCGATTATATATAT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference