PmiREN: Plant microRNA Encyclopedia

Gma-MIR156b

Basic info.

miRNA locus ID
Gma-MIR156b

miRNA locus accession
PmiREN006720

Organism
Glycine max

Genomic location
Gma-Gm14 990333 990459 +

Comments
A member of family MIR156

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GTGATGTGAGATATCTC   T       -A       A     -A     G  T   T    GA
                   ATG TGACAGA  GAGAGAG GCACA  CCCGG AA GGC AAAG  
                   ||| |||||||  ||||||| |||||  ||||| || ||| ||||   
                   TAC ACTGTCT  TTCTCTC CGTGT  GGGTT TT CCG TTTC  
CGTTTCCGTACACTTACAC   T       CC       C     GA     G  T   -    TG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Glyma.19G146000.1	0.0	0	0 (2)
Glyma.02G121300.3	0.5	NA	0 (3)
Glyma.05G019000.2	1.0	NA	0 (4)
Glyma.17G080700.1	1.0	NA	0 (3)
Glyma.07G072300.1	3.0	1	0 (2)
Glyma.04G159600.1	4.0	NA	0 (3)
Glyma.18G005600.7	0.0	0	1 (2)
Glyma.06G205701.1	1.0	0	2 (1)
Glyma.08G023300.2	3.0	NA	2 (1)
Glyma.17G091000.3	3.0	NA	2 (2)
Glyma.02G155000.4	NA	NA	2 (2)
Glyma.05G041600.1	NA	NA	2 (1)
Glyma.08G220100.2	NA	2	2 (1)
Glyma.13G206800.1	NA	NA	2 (1)
Glyma.18G049400.1	NA	NA	2 (1)
Glyma.19G160400.1	NA	2	2 (2)
Glyma.02G177500.1	0.0	0	NA
Glyma.09G113800.1	0.0	0	NA
Glyma.11G251500.2	0.0	0	NA
Glyma.01G063700.1	0.5	NA	NA
Glyma.12G162999.1	0.5	0	NA
Glyma.01G075800.1	1.0	NA	NA
Glyma.04G197100.1	1.0	0	NA
Glyma.05G204100.4	1.0	0	NA
Glyma.06G168600.5	1.0	NA	NA
Glyma.06G238100.1	1.0	NA	NA
Glyma.08G011500.3	1.0	NA	NA
Glyma.11G163828.1	1.0	0	NA
Glyma.12G226000.1	1.0	1	NA
Glyma.13G274900.1	1.0	1	NA
Glyma.06G236676.1	1.5	NA	NA
Glyma.07G199000.1	1.5	NA	NA
Glyma.13G177400.1	1.5	1	NA
Glyma.16G054500.1	1.5	1	NA
Glyma.19G094000.3	1.5	1	NA
Glyma.11G086600.1	2.0	2	NA
Glyma.18G080500.1	2.0	NA	NA

Mature miRNA conservation

Link

Reference

>Dual functions of GmTOE4a in the regulation of photoperiod-mediated flowering and plant morphology in soybean. Plant Mol Biol, 2015

>GmmiR156b overexpression delays flowering time in soybean. Plant Mol Biol, 2015