PmiREN: Plant microRNA Encyclopedia

Gma-MIR171c

Basic info.

miRNA locus ID
Gma-MIR171c

miRNA locus accession
PmiREN006846

Organism
Glycine max

Genomic location
Gma-Gm07 43679640 43679757 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TATAATTTAAG   T  A                       -- G    T     ATGA
             AAC TG GATATTGGTGCGGTTCAATCAGA  A GCAG GTTTT    
             ||| || |||||||||||||||||||||||  | |||| |||||     
             TTG AC CTATAACCGTGCCGAGTTAGTTT  T TGTC CGAAA    
CGGGCTCTAGTTA   T  A                       AT G    T     ACCT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Glyma.01G079500.1	0.5	NA	0 (3)
Glyma.01G136300.1	0.5	NA	2 (6)
Glyma.03G031800.1	0.5	NA	2 (4)
Glyma.11G168219.1	0.5	NA	2 (1)
Glyma.11G213000.4	4.5	2	2 (1)
Glyma.14G211100.1	4.5	NA	2 (1)
Glyma.18G043600.1	4.5	NA	2 (1)
Glyma.04G229500.2	NA	NA	2 (1)
Glyma.13G204500.1	1.0	NA	NA
Glyma.15G108100.4	1.0	NA	NA
Glyma.01G177200.1	2.0	NA	NA
Glyma.11G065200.1	2.0	1	NA

Mature miRNA conservation

Link

Reference

>An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus. BMC Plant Biol, 2018