PmiREN: Plant microRNA Encyclopedia

Gma-MIR171d

Basic info.

miRNA locus ID
Gma-MIR171d

miRNA locus accession
PmiREN006847

Organism
Glycine max

Genomic location
Gma-Gm01 49100248 49100377 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   AC          CAT  T C       T       C     ----  C     ---       TCACA
     ATGAAGTAGC   TG G TATTGGC CGGTTCA TCAGA    CA AAAAC   AACCATA     
     ||||||||||   || | ||||||| ||||||| |||||    || |||||   |||||||      
     TACTTTATCG   AC C ATAACTG GCTGAGT AGTTT    GT TTTTG   TTGGTGT     
TTTTC          -TC  T T       T       T     CTAA  -     CTT       TTACA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Glyma.13G238400.8	3.5	NA	2 (1)
Glyma.04G164400.3	NA	NA	2 (1)
Glyma.06G200100.5	NA	NA	2 (1)
Glyma.09G209400.1	NA	NA	2 (1)
Glyma.01G079500.1	1.5	NA	NA
Glyma.01G136300.1	1.5	NA	NA
Glyma.03G031800.1	1.5	NA	NA
Glyma.11G168219.1	1.5	NA	NA
Glyma.13G204500.1	2.0	NA	NA
Glyma.15G108100.4	2.0	NA	NA

Mature miRNA conservation

Link

Reference

>An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus. BMC Plant Biol, 2018