PmiREN: Plant microRNA Encyclopedia

Gma-MIR171j

Basic info.

miRNA locus ID
Gma-MIR171j

miRNA locus accession
PmiREN006853

Organism
Glycine max

Genomic location
Gma-Gm02 4013996 4014155 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

               T    T         C       C      ATGTAT       -     -T     CC   --C    AA
   ATATGAAGTAGT ATTG GATATTGGC TGGTTCA TCAGAC      ACCACGG CACGG  TGTGT  TTG   TAGA  
   |||||||||||| |||| ||||||||| ||||||| ||||||      ||||||| |||||  |||||  |||   ||||   
   TGTACTTTATCG TGAC CTATAACCG GCCGAGT AGTTTG      TGGTGTT GTGTT  ACATA  AAC   ATTT  
GTT            -    T         T       T      -GGTTT       A     GT     -A   AAA    AG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Glyma.01G079500.1	0.5	NA	NA
Glyma.01G136300.1	0.5	NA	NA
Glyma.03G031800.1	0.5	NA	NA
Glyma.11G168219.1	0.5	NA	NA
Glyma.13G204500.1	1.0	NA	NA
Glyma.15G108100.4	1.0	NA	NA
Glyma.01G177200.1	2.0	NA	NA
Glyma.11G065200.1	2.0	1	NA

Mature miRNA conservation

Link

Reference

>An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus. BMC Plant Biol, 2018