Gma-MIR171k

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  GATATGGGAAGCA  G    C          A         C  A  -  -GA     A   AG
               GA AAAG GATGTTGGTG GGTTCAATC GA GA CG   TTTAC TGT  
               || |||| |||||||||| ||||||||| || || ||   ||||| |||   
               CT TTTC CTATAACCGC CCGAGTTAG CT CT GC   AAATG ACG  
CCCCTCGAGTAGTTA  A    A          G         A  -  A  ATA     -   AA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Glyma.01G136300.1 1.0 NA 0 (5)
Glyma.03G031800.1 1.0 NA 0 (7)
Glyma.18G089400.1 NA NA 0 (2)
Glyma.02G223300.1 NA NA 2 (1)
Glyma.04G007500.1 NA NA 2 (1)
Glyma.11G215500.1 NA NA 2 (2)
Glyma.17G128600.1 NA NA 2 (1)
Glyma.18G041100.1 NA NA 2 (3)
Glyma.01G079500.1 1.0 NA NA
Glyma.11G168219.1 1.0 NA NA
Glyma.01G177200.1 1.5 NA NA
Glyma.10G261600.1 1.5 NA NA
Glyma.11G065200.1 1.5 1 NA
Glyma.20G129200.1 1.5 NA NA
Glyma.04G251900.1 2.0 NA NA
Glyma.06G110800.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference